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trimal

Automated alignment trimming for phylogenetic analyses

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About

Automated alignment trimming in large-scale phylogenetic analyses

Commands

trimal

Examples

Trim an alignment using automated heuristic methods$ trimal -in alignment.fasta -auto1 -out trimmed.fasta
Remove columns with gap threshold of 50%$ trimal -in alignment.fasta -gt 0.5 -out trimmed.fasta
Get alignment statistics and residue positions$ trimal -in alignment.fasta -html -htmlout report.html