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sylph

Ultrafast taxonomic profiling and genome querying for metagenomic samples

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About

Ultrafast taxonomic profiling and genome querying for metagenomic samples

Commands

sylph

Examples

Profile taxonomic composition of a metagenomic sample$ sylph profile -d database.syldb sample.fq.gz -o profile.tsv
Query a genome against a sylph database$ sylph query -d database.syldb genome.fasta -o results.tsv
Create a sylph database from reference genomes$ sylph sketch -d database.syldb reference_genomes/*.fasta