sprocket

Bioinformatics workflow engine for executing WDL pipelines

brewmacoslinux

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Bioinformatics workflow engine built on the Workflow Description Language (WDL)

sprocket

Execute a WDL workflow with input JSON$ sprocket run workflow.wdl --inputs inputs.json

Validate WDL workflow syntax$ sprocket validate workflow.wdl

Run workflow with output directory specification$ sprocket run workflow.wdl --inputs inputs.json --output-dir results/