npm

snakemake

Pythonic workflow system for defining and executing data analysis pipelines

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About

Pythonic workflow system

Commands

snakemake

Examples

Run a Snakefile workflow with 4 parallel jobs$ snakemake -j 4
Generate a DAG visualization of the workflow$ snakemake --dag | dot -Tsvg > dag.svg
Perform a dry run to see what would be executed$ snakemake -n