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skani

Fast, robust ANI calculation for genomes and metagenomic contigs

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About

Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs

Commands

skani

Examples

Calculate ANI between two genome files$ skani triangle -l genomes.txt -o output.tsv
Compute pairwise ANI between all genomes in a list$ skani triangle -l genome_list.txt -o ani_matrix.tsv
Compare a query genome against a reference database$ skani query -q query_genome.fa -r reference_db/ -o results.tsv