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seqkit

Cross-platform ultrafast toolkit for FASTA/Q file manipulation

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About

Cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

Commands

seqkit

Examples

Count sequences in a FASTA file$ seqkit stats input.fasta
Extract sequences by ID from a FASTA file$ seqkit grep -p 'sequence_id' input.fasta
Convert FASTQ to FASTA format$ seqkit fq2fa input.fastq -o output.fasta