npm

samtools

Tools for manipulating next-generation sequencing data in SAM/BAM format

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About

Tools for manipulating next-generation sequencing data

Commands

samtools

Examples

Convert SAM file to compressed BAM format$ samtools view -b input.sam -o output.bam
Sort BAM file by genomic coordinates$ samtools sort input.bam -o sorted.bam
Index BAM file for fast random access$ samtools index sorted.bam