Fast tools for processing and analyzing SAM/BAM sequence alignment files.
Tools for working with SAM/BAM data
sambamba$ sambamba sort input.bam -o output.sorted.bam$ sambamba view -h -F "[mapping_quality] >= 20" input.bam -o filtered.bam$ sambamba view -c input.bam$ sambamba markdup input.bam output.markdup.bam$ sambamba depth base input.bam