Fast and accurate RNA-seq read aligner using sequential mapping
RNA-seq aligner
STAR$ STAR --runMode genomeGenerate --genomeDir ./starIndex --genomeFastaFiles genome.fa --sjdbGTFfile genes.gtf$ STAR --genomeDir ./starIndex --readFilesIn reads.fastq --outFileNamePrefix ./results/$ STAR --genomeDir ./starIndex --readFilesIn reads_R1.fastq.gz reads_R2.fastq.gz --readFilesCommand zcat --runThreadN 8 --outFileNamePrefix ./results/