raxml-ng

Fast phylogenetic tree inference using maximum likelihood

brewmacoslinux

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RAxML Next Generation: faster, easier-to-use and more flexible

raxml-ng

Build a phylogenetic tree from an alignment file$ raxml-ng --msa sequences.phy --model GTR+G --prefix tree

Perform bootstrap analysis with 100 replicates$ raxml-ng --msa sequences.phy --model GTR+G --bs-trees 100 --prefix bootstrap_tree

Test multiple evolutionary models and select the best one$ raxml-ng --msa sequences.phy --model TEST --prefix model_selection