proteinortho

Detects orthologous genes across multiple species sequences

brewmacoslinux

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Detecting orthologous genes within different species

proteinorthoproteinortho5.plproteinortho_graph.pl

Compare proteins from two species and find orthologs$ proteinortho -project=myproject species1.fasta species2.fasta

Analyze multiple species with custom E-value threshold$ proteinortho -evalue=1e-5 -project=multispecies sp1.faa sp2.faa sp3.faa sp4.faa

Generate ortholog graph visualization from results$ proteinortho_graph.pl myproject.proteinortho.tsv