npm

prodigal

Microbial gene prediction tool that identifies protein-coding genes in DNA sequences

brewmacoslinux
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Source

About

Microbial gene prediction

Commands

prodigal

Examples

Predict genes in a FASTA file and output protein sequences$ prodigal -i input.fasta -a proteins.fasta -o genes.gff
Predict genes with nucleotide sequences output$ prodigal -i input.fasta -d nucleotides.fasta -o genes.gff
Run in metagenomic mode for mixed microbial sequences$ prodigal -i metagenome.fasta -p meta -o genes.gff -a proteins.fasta