npm

perbase

Fast and correct perbase BAM/CRAM analysis with base-level statistics

brewmacoslinux
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About

Fast and correct perbase BAM/CRAM analysis

Commands

perbase

Examples

Generate perbase statistics for a BAM file$ perbase stats input.bam > output.txt
Analyze a CRAM file with specific output format$ perbase stats --output-format tsv input.cram
Generate perbase statistics with quality filtering$ perbase stats --min-bq 20 input.bam