npm

pangene

Construct pangenome gene graphs from multiple genome sequences

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About

Construct pangenome gene graphs

Commands

pangene

Examples

Build a pangenome graph from multiple FASTA files$ pangene -i genome1.fasta genome2.fasta genome3.fasta -o pangenome_output
Generate pangenome with custom parameters for sequence identity$ pangene -i genomes.txt -o pangenome -s 0.9 -l 100
Construct gene graph and export in GFA format$ pangene -i input_sequences.fasta -o graph_output -f gfa