npm

nextflow

Workflow engine for reproducible scientific data analysis

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About

Reproducible scientific workflows

Commands

nextflow

Examples

Run a Nextflow workflow from a local script$ nextflow run main.nf
Execute a workflow with custom parameters$ nextflow run main.nf --input data.txt --output results
Run a published workflow from GitHub with resume capability$ nextflow run nf-core/rnaseq -resume --genome GRCh37