mummer

Align DNA sequences to find similarities and differences between genomes.

brewmacoslinux

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About

Genome alignment tool

mummernucmerpromerdelta-filtershow-coordsshow-snpsshow-alignsmummerplot

compare two DNA sequences and find matching regions$ nucmer reference.fasta query.fasta

align protein sequences between two genomes$ promer reference.fasta query.fasta

display alignment coordinates from comparison results$ show-coords out.delta

find single nucleotide differences between genome sequences$ show-snps out.delta

visualize genome alignment as a plot$ mummerplot out.delta -p output_prefix