mmseqs2

Fast sequence search and clustering for protein/DNA databases

brewmacoslinux

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Software suite for very fast sequence search and clustering

mmseqs

Search a query sequence against a target database$ mmseqs search query.fasta targetDB results.m8 tmp/

Cluster sequences from a FASTA file$ mmseqs easy-cluster input.fasta clusterDB tmp/

Create a searchable database from sequences$ mmseqs createdb sequences.fasta sequenceDB