miniprot

Align proteins to genomes with splicing and frameshift support

brewmacoslinux

Try with needOr install directly

About

Align proteins to genomes with splicing and frameshift

miniprot

Align a protein sequence to a genome in FASTA format$ miniprot genome.fa protein.fa > alignment.paf

Align proteins with splice site prediction and generate GFF output$ miniprot -t8 --gff genome.fa proteins.fa > alignment.gff

Align proteins allowing frameshifts with secondary alignment output$ miniprot --outs=5 genome.fa protein.fa > alignment.paf