minigraph

Sequence-to-graph mapper and graph generator for genomic data

brewmacoslinux

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Proof-of-concept seq-to-graph mapper and graph generator

minigraph

Map a sequence to a reference graph$ minigraph -t 4 reference.gfa query.fa > alignment.paf

Generate a graph from multiple sequences$ minigraph -x asm seq1.fa seq2.fa seq3.fa > graph.gfa

Map long reads to a reference with increased sensitivity$ minigraph -t 8 -x lr reference.gfa reads.fq > mapped.paf