npm

lastz

Pairwise aligner for DNA sequences with high sensitivity and speed

brewmacoslinux
Try with needOr install directly
Source

About

Pairwise aligner for DNA sequences

Commands

lastzlastz_D

Examples

Align two DNA sequences from FASTA files$ lastz sequence1.fa sequence2.fa
Align sequences with specific output format (MAF)$ lastz sequence1.fa sequence2.fa --format=maf
Perform alignment with customized scoring parameters$ lastz sequence1.fa sequence2.fa --match=6 --mismatch=42 --gapopen=400