kalign

Fast multiple sequence alignment program for biological sequences

brewmacoslinux

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Fast multiple sequence alignment program for biological sequences

kalign

Align sequences from a FASTA file and output to stdout$ kalign input.fasta

Align sequences and save output to a file in FASTA format$ kalign input.fasta -o output.fasta

Align sequences with custom gap opening penalty$ kalign input.fasta -gpo 10 -o aligned.fasta