igv

Interactive viewer for genomic data and sequence alignments.

brewmacoslinux

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Interactive Genomics Viewer

igv

open and view a genome assembly file$ igv genome.fasta

load a BAM alignment file to inspect reads$ igv reads.bam

view multiple genomic data files together$ igv genome.fasta reads.bam variants.vcf

start IGV with a specific genome reference$ igv --genome hg38

load a region annotation file in GFF format$ igv annotations.gff3