fxtools

Collection of commandline tools for manipulating Fasta/Fastq sequence files

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About

A collection of commandline Fasta/Fastq utility tools

Commands

fxtools

Examples

Convert FASTQ file to FASTA format$ fxtools fastq2fasta input.fastq output.fasta
Extract sequences with quality scores above threshold$ fxtools filter -q 30 input.fastq output.fastq
Get basic statistics about a sequence file$ fxtools stats input.fasta