Manipulate and filter FASTQ sequence files from command line
fqkit: a simple and cross-platform program for fastq file manipulation
fqkit$ fqkit count file.fastq$ fqkit filter -l 100 file.fastq > filtered.fastq$ fqkit fq2fa file.fastq > file.fasta$ fqkit stats file.fastq$ fqkit split -n 4 file.fastq