fqkit

Simple and cross-platform tool for FASTQ file manipulation

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fqkit: a simple and cross-platform program for fastq file manipulation

fqkit

Convert FASTQ to FASTA format$ fqkit fq2fa input.fastq > output.fasta

Filter FASTQ by sequence quality (min quality score 20)$ fqkit filter -q 20 input.fastq > filtered.fastq

Extract sequences with length between 50-100 bp$ fqkit range -m 50 -M 100 input.fastq > output.fastq