flye

De novo assembler for single molecule sequencing reads using repeat graphs

brewmacoslinux

Try with needOr install directly

About

De novo assembler for single molecule sequencing reads using repeat graphs

flye

Assemble PacBio reads into a genome$ flye --pacbio-raw reads.fastq --out-dir assembly --genome-size 5m

Assemble Oxford Nanopore reads with medium accuracy$ flye --nano-corr reads.fastq --out-dir assembly --genome-size 3m

Polish assembly with multiple threads$ flye --pacbio-hifi reads.fastq --out-dir assembly --genome-size 10m --threads 8