npm

fastqc

Quality control analysis tool for high throughput sequencing data

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About

Quality control tool for high throughput sequence data

Commands

fastqc

Examples

Analyze a single FASTQ file and generate HTML report$ fastqc sample.fastq
Analyze multiple FASTQ files in batch mode$ fastqc *.fastq -o results/
Run analysis without opening browser, specify output directory$ fastqc -n sample.fastq.gz -o ./fastqc_results