fastq-tools

Small utilities for working with fastq sequence files

brewmacoslinux

Try with needOr install directly

About

Small utilities for working with fastq sequence files

fastq-to-fastafastq-statsfastq-uniqfastq-filterfastq-sample

Convert FASTQ file to FASTA format$ fastq-to-fasta < reads.fastq > reads.fasta

Generate statistics about a FASTQ file$ fastq-stats reads.fastq

Filter FASTQ file by sequence length$ fastq-filter -l 50 reads.fastq > filtered_reads.fastq