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fastme

Fast distance-based phylogenetic tree inference program

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About

Accurate and fast distance-based phylogeny inference program

Commands

fastme

Examples

Build a phylogenetic tree from a distance matrix$ fastme -i distances.txt -o tree.nwk
Infer tree using neighbor-joining method with bootstrap$ fastme -i sequences.phy -m NJ -b 100 -o output_tree.nwk
Generate tree from aligned sequences with default parameters$ fastme -i alignment.fasta -o phylotree.nwk