npm

fastk

K-mer counter optimized for high-fidelity long-read sequencing data

brewmacoslinux
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About

K-mer counter for high-fidelity shotgun datasets

Commands

FastKHistexProfexTabexLogex

Examples

Count k-mers in a FASTQ file with k=21$ FastK -k21 -t1 input.fastq
Generate a histogram of k-mer frequencies$ Histex -h input.hist > kmer_histogram.txt
Profile k-mer composition of a sequence file$ Profex input.hist | head -20