npm

fastga

Pairwise whole genome aligner for rapid sequence comparison

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About

Pairwise whole genome aligner

Commands

fastga

Examples

Align two genome sequences and output alignment$ fastga genome1.fasta genome2.fasta -o alignment.out
Perform alignment with custom match/mismatch scoring$ fastga seq1.fa seq2.fa -m 2 -x -2 -o result.txt
Generate detailed alignment with identity percentage$ fastga reference.fasta query.fasta -v -o detailed_alignment.txt