npm

diamond

Accelerated BLAST-compatible local sequence aligner for DNA/protein

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About

Accelerated BLAST compatible local sequence aligner

Commands

diamond

Examples

Build a reference database from a FASTA file$ diamond makedb --in reference.fasta --db reference
Perform local alignment search against database$ diamond blastx -d reference -q query.fasta -o matches.tsv
Run blastp search with high sensitivity$ diamond blastp -d reference -q query.fasta -o results.tsv --sensitive