dcm2niix

Convert DICOM medical images to NIfTI format

brewmacoslinux

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DICOM to NIfTI converter

dcm2niix

convert a folder of DICOM files to NIfTI$ dcm2niix /path/to/dicom/folder

convert DICOM and save to a specific output directory$ dcm2niix -o /output/path /path/to/dicom/folder

convert DICOM with custom filename prefix$ dcm2niix -f myscan /path/to/dicom/folder

compress NIfTI output files to gzip format$ dcm2niix -z y /path/to/dicom/folder

convert single DICOM file to NIfTI$ dcm2niix /path/to/file.dcm