bioperl

Perl modules for bioinformatics, genomics and life science research

brewmacoslinux

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Perl tools for bioinformatics, genomics and life science

bp_seqretbp_mrtransbp_blast2htmlbp_fetchbp_taxodumpbp_unflatten_seq

Convert sequence format from GenBank to FASTA$ bp_seqret -i genbank -o fasta input.gb > output.fa

Fetch sequences from NCBI using sequence identifiers$ bp_fetch genbank NM_000001 NM_000002 > sequences.gb

Parse and display BLAST results as HTML$ bp_blast2html blast_output.txt > blast_results.html