npm

bedtk

Simple toolset for manipulating and analyzing BED format files

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About

Simple toolset for BED files

Commands

bedtk

Examples

Convert BED file to other formats or validate BED format$ bedtk convert input.bed -o output.gff
Merge overlapping intervals in a BED file$ bedtk merge input.bed > merged.bed
Extract genomic regions based on BED coordinates$ bedtk extract reference.fa regions.bed > output.fa