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beagle

Evaluates sequence evolution likelihood on phylogenetic trees

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About

Evaluate the likelihood of sequence evolution on trees

Commands

beagle

Examples

Analyze sequence evolution on a phylogenetic tree$ beagle --tree=tree.nwk --sequences=sequences.fasta
Calculate likelihood with specific substitution model$ beagle --tree=tree.nwk --sequences=sequences.fasta --model=HKY85
Output detailed results to file$ beagle --tree=tree.nwk --sequences=sequences.fasta --output=results.txt