npm

autocycler

Generates consensus long-read assemblies for bacterial genomes

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About

Tool for generating consensus long-read assemblies for bacterial genomes

Commands

autocycler

Examples

Generate a consensus assembly from long-read sequencing data$ autocycler -i input_reads.fastq -o output_assembly.fasta
Run autocycler with specified number of threads$ autocycler -i input_reads.fastq -o output_assembly.fasta -t 8
Display help information and available options$ autocycler --help