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adapterremoval

Rapid adapter trimming, identification, and read merging for NGS data

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Rapid adapter trimming, identification, and read merging

Commands

AdapterRemoval

Examples

Trim adapters from paired-end FASTQ files$ AdapterRemoval --file1 reads_R1.fastq --file2 reads_R2.fastq --basename output

Merge overlapping paired-end reads after trimming$ AdapterRemoval --file1 reads_R1.fastq --file2 reads_R2.fastq --merge-output-files --basename output

Trim single-end reads with custom adapter sequence$ AdapterRemoval --file1 reads.fastq --adapter1 AGATCGGAAGAGC --basename output