abpoa

SIMD-based C library for fast partial order alignment using adaptive band

brewmacoslinux

Try with needOr install directly

About

SIMD-based C library for fast partial order alignment using adaptive band

abpoa

Align multiple DNA sequences from a FASTA file$ abpoa input.fasta -o output.msa

Perform sequence alignment with custom match/mismatch scores$ abpoa seq1.fasta seq2.fasta -m 2 -n 4 -o alignment.txt

Generate consensus sequence from alignment with output to stdout$ abpoa sequences.fasta -c